1. on linux (unix version), the preference tick telling it to save geometry on exit does nothing. While it's minor, having it would really speed up changing mods while having long list (and with things like randtrel/random flagship, it becomes noticeable - sure, ''first world problem'', but still

2. It would be nice to have option that remembers which mods were "ticked" to be applied (so one doesn't have to re-tick them on every start of mod manager). Again, would *really* speed up process of re-enabling mods that require doing so before every run (randomizing stuff, and things like artillery crash fix). Ticked/unticked status could be saved in modorder file, for example. Of course, in case of finding new (differently-named) mod, the thing would default to "unticked".
/Estel